DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and prrx1a

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_999899.1 Gene:prrx1a / 406431 ZFINID:ZDB-GENE-020905-5 Length:245 Species:Danio rerio


Alignment Length:163 Identity:40/163 - (24%)
Similarity:63/163 - (38%) Gaps:45/163 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 MHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRY 334
            :.|||   ..|.||:..:.....|:...||.                      :.:|.||::...
Zfish    67 LESPG---LTSGSDTTQQENEQLNAEEKKKR----------------------KQRRNRTTFNSS 106

  Fly   335 QTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK--MASMN-------- 389
            |...||:.|....|.....|.::|..:.|||.::::||||||.|:::..:  :||.|        
Zfish   107 QLQALERVFERTHYPDAFVREDLARRVNLTEARVQVWFQNRRAKFRRNERAMLASKNASLLKSFS 171

  Fly   390 ---------IVPYHMGPYGHPYHQFDIHPSQFA 413
                     ||| ...|..:.|..:...||..|
Zfish   172 GEVTAVEQPIVP-RPAPRPNDYLSWGSSPSYSA 203

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 20/55 (36%)
prrx1aNP_999899.1 Homeodomain 101..153 CDD:459649 18/51 (35%)
OAR 220..237 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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