Protein Alignment Scr and cdx1a

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_998001.2
• Gene: cdx1a / 405762
• ZFINID: ZDB-GENE-050510-1
• Length: 228
• Species: Danio rerio
• Alignment Length: 155
• Identity: 60/155 - (38%)
• Similarity: 86/155 - (55%)
• Gaps: 27/155 - (17%)

  Fly   247 AAGLNNNHSGSGVSG--GPGNVN--VPMHSPGGGDSDSES----------DSGNEAGSSQNSGNG 297
            |.|.:.:|:||..|.  |||:.:  .|::..|.|.|...:          |.|..:|:..:
Zfish    45 ALGNDLHHTGSSWSPGFGPGSRDDWPPLYGHGTGHSLPANGVEVSVLPSVDQGLLSGAPVD---- 105

  Fly   298 KKNPPQIYPWMKRVHLGTSTVNANGETK---RQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAH 359
             :..||  .||:|..:.|   |..|:|:   :.|..|:..|.|||||||||:||:|.||:.|:|.
Zfish   106 -REEPQ--DWMRRSAVPT---NPGGKTRTKDKYRVVYSDVQRLELEKEFHFSRYITIRRKAELAG 164

  Fly   360 ALCLTERQIKIWFQNRRMKWKKEHK 384
            .|.|:|||:||||||||.|.:|.:|
Zfish   165 TLNLSERQVKIWFQNRRAKERKMNK 189

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	33/58 (57%)
cdx1a	NP_998001.2	Caudal_act	11..123	CDD:461413	23/87 (26%)
		Homeodomain	131..186	CDD:459649	33/54 (61%)