Protein Alignment Scr and cdx2

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_989209.1
• Gene: cdx2 / 394817
• XenbaseID: XB-GENE-483306
• Length: 252
• Species: Xenopus tropicalis
• Alignment Length: 201
• Identity: 63/201 - (31%)
• Similarity: 86/201 - (42%)
• Gaps: 56/201 - (27%)

  Fly   249 GLNNNHSGSGVSGG----------PGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKN--- 300
            ||::....||.|.|          ...|: |.:|| |....:.|..||.|.|...|....:.
 Frog    43 GLDHGAPSSGSSAGWITPYGPPRDEWGVH-PTYSP-GHTHINPSPVGNMAFSPDYSPAQVQGQPC 105

  Fly   301 --------PPQI------------YPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHF 345
                    |||:            |.|:::.....||.:......:.|..||..|.||||||||:
 Frog   106 VGVLPAGPPPQLSPGSEDGHRRHHYEWLRKPVSQASTGSKTRTKDKYRVVYTDQQRLELEKEFHY 170

  Fly   346 NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNI------------------VP 392
            :||:|.||:.|:|..|.|:|||:||||||||   .||.|:....|                  :.
 Frog   171 SRYITIRRKAELAANLGLSERQVKIWFQNRR---AKERKITKKRIQQTQTGQNGPDTLSPEPSIT 232

  Fly   393 YHMGPY 398
            :||.|:
 Frog   233 HHMIPH 238

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	32/55 (58%)
cdx2	NP_989209.1	Caudal_act	13..143	CDD:461413	23/101 (23%)
		Homeodomain	151..206	CDD:459649	34/57 (60%)