Protein Alignment Scr and otp

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001286654.1
• Gene: otp / 37364
• FlyBaseID: FBgn0015524
• Length: 416
• Species: Drosophila melanogaster
• Alignment Length: 395
• Identity: 99/395 - (25%)
• Similarity: 152/395 - (38%)
• Gaps: 113/395 - (28%)

  Fly   198 NNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGG 262
            ||...::..|:|...    ||.:.:::...| .|..:..:|.:||.....||...:..|..|.||
  Fly     3 NNLGANVLGPKDCDL----PKAALTALHAGV-NSFGQLPVGPNLADLGGGAGGGGSSGGVPVGGG 62

  Fly   263 PGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANG----- 322
            ...:::   |.|..|:.:..:.||  |||.| |||..|                  |.||
  Fly    63 VARLHI---SGGLCDNSNALNGGN--GSSGN-GNGNNN------------------NGNGNNNNS 103

  Fly   323 -----------ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 376
                       :.||.||.:|..|..|||:.|....|.....|.|||..:.|||.::::||||||
  Fly   104 MQQQDQHLDKNKQKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQVWFQNRR 168

  Fly   377 MKWKKEHKMASM-----NIVPYH-MGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTG-------- 427
            .||||..|..::     .::|.| :.|:|          :...:::. |.  ..|||
  Fly   169 AKWKKRKKTTNVFRTPGALLPSHGLPPFG----------ANITNIAMGDG--LCGTGMFGGDRWS 221

  Fly   428 ----------XRLNQLYQEPYQTAAAASAASGYQSQDGGPIGGGSV----------------GVG 466
                       :|||  ..|..::..:...||...  |..:|.||.                .||
  Fly   222 VGVNPMTAGFGQLNQ--SSPLSSSLNSGLNSGINM--GSALGAGSYQHYGLNALGDSMMYQHSVG 282

  Fly   467 GGAGGPGSLANGGSNGSGPNSLFASAASSSQAPDCIKYPQEFXSQVIIRQQ----HQQQQDNSMD 527
            |.:.||    :|..:.:.|.::  ::.||...|.....|.   ||..:..:    |||||..:..
  Fly   283 GVSCGP----SGSPSATTPPNM--NSCSSVTPPPLSAQPN--SSQNELNGEPMPLHQQQQQQTHQ 339

  Fly   528 RNQER 532
            ..|::
  Fly   340 HQQQQ 344

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	26/55 (47%)
otp	NP_001286654.1	Homeodomain	117..168	CDD:459649	22/50 (44%)