DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and HOXD13

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_000514.2 Gene:HOXD13 / 3239 HGNCID:5136 Length:343 Species:Homo sapiens


Alignment Length:388 Identity:89/388 - (22%)
Similarity:134/388 - (34%) Gaps:98/388 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 AGNSSAGG---SGGGAGGS---------GGVVPSG------------GTNGGQGSAGAATPGAND 74
            ||:....|   .||||||:         .....||            ||:.|:.:|.||...|  
Human     4 AGSWDMDGLRADGGGAGGAPASSSSSSVAAAAASGQCRGFLSAPVFAGTHSGRAAAAAAAAAA-- 66

  Fly    75 YFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAA 139
               ||||.:...||.|.:       ..|...:.........:|     :....::......||||
Human    67 ---AAAAASGFAYPGTSE-------RTGSSSSSSSSAVVAARP-----EAPPAKECPAPTPAAAA 116

  Fly   140 VAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSL 204
            .|......|....|      ......||:.::              |.....|:..|        
Human   117 AAPPSAPALGYGYH------FGNGYYSCRMSH--------------GVGLQQNALKS-------- 153

  Fly   205 ASPQDLSTRDISPKLS----PSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGN 265
                       ||..|    |......|:...:..|....:.|.|........:: |.....||.
Human   154 -----------SPHASLGGFPVEKYMDVSGLASSSVPANEVPARAKEVSFYQGYT-SPYQHVPGY 206

  Fly   266 VNVPMHSPGGGDSDSESDSGNEAGSSQNSGNG-------KKNPPQIYPWMKRVHLGTSTVN---- 319
            ::: :.:.|.|:...|:....|...|....||       .|:.||...:.|....|...:|    
Human   207 IDM-VSTFGSGEPRHEAYISMEGYQSWTLANGWNSQVYCTKDQPQGSHFWKSSFPGDVALNQPDM 270

  Fly   320 -ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 381
             .....:::|..||:.|..|||.|:..|:::.:.:|..|:.|..|:|||:.|||||||:|.||
Human   271 CVYRRGRKKRVPYTKLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 24/55 (44%)
HOXD13NP_000514.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..28 9/23 (39%)
polyalanine repeat 57..71 7/18 (39%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 78..115 4/48 (8%)
HoxA13_N <100..172 CDD:463521 17/110 (15%)
Homeodomain 277..333 CDD:459649 24/55 (44%)

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