DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and HOXD1

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_078777.1 Gene:HOXD1 / 3231 HGNCID:5132 Length:328 Species:Homo sapiens


Alignment Length:209 Identity:67/209 - (32%)
Similarity:90/209 - (43%) Gaps:57/209 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 PSSVVESVARSLNKGVLG--------GSLAAAAAAAGLNNNHSGSGV-SGG-----PGNVN-VPM 270
            |.:...:.|...:.|.||        |.|..||...|.:.:::.|.| |||     .|.|: ...
Human    93 PGAAPAAAAGGADYGFLGSGPAYDFPGVLGRAADDGGSHVHYATSAVFSGGGSFLLSGQVDYAAF 157

  Fly   271 HSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYP-----------------WMKRVHLGTSTV 318
            ..||...:..::.:....|:.|.:...    |..||                 |||        |
Human   158 GEPGPFPACLKASADGHPGAFQTASPA----PGTYPKSVSPASGLPAAFSTFEWMK--------V 210

  Fly   319 NANGETKRQ-------------RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 370
            ..|...|.:             ||:::..|..|||||||||:||||.||||||:.|.|.:.|:||
Human   211 KRNASKKGKLAEYGAASPSSAIRTNFSTKQLTELEKEFHFNKYLTRARRIEIANCLHLNDTQVKI 275

  Fly   371 WFQNRRMKWKKEHK 384
            ||||||||.||..:
Human   276 WFQNRRMKQKKRER 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 36/68 (53%)
HOXD1NP_078777.1 Antp-type hexapeptide 204..209 1/4 (25%)
Homeodomain 233..286 CDD:459649 35/52 (67%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 305..328
Blue background indicates that the domain is not in the aligned region.

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