Protein Alignment Scr and Gsc

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001178802.1
• Gene: Gsc / 317715
• RGDID: 631425
• Length: 256
• Species: Rattus norvegicus
• Alignment Length: 223
• Identity: 51/223 - (22%)
• Similarity: 78/223 - (34%)
• Gaps: 68/223 - (30%)

  Fly   173 PVTPGGSG-GGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGV 236
            ||.|||:| ...|.||....||......:.|  |:|
  Rat    61 PVAPGGAGLPAAVGGSRLGYNSYFYGQLHVQ--AAP----------------------------- 94

  Fly   237 LGGSLAAAAAAAGLNNNHSGSGVSG--GPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKK 299
            :|.:...|....|...........|  |||:|.|   ||
  Rat    95 VGPACCGAVPPLGAQQCSCVPTPPGYEGPGSVLV---SP-------------------------- 130

  Fly   300 NPPQIYPWMKRVHLGTSTVNANGE-----TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAH 359
            .|.|:.|:|....|..:.:....:     .:|.||.:|..|...||..|...:|.....|.::|.
  Rat   131 VPHQMLPYMNVGTLSRTELQLLNQLHCRRKRRHRTIFTDEQLEALENLFQETKYPDVGTREQLAR 195

  Fly   360 ALCLTERQIKIWFQNRRMKWKKEHKMAS 387
            .:.|.|.::::||:|||.||:::.:.:|
  Rat   196 KVHLREEKVEVWFKNRRAKWRRQKRSSS 223

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	20/55 (36%)
Gsc	NP_001178802.1	Homeodomain	161..217	CDD:459649	20/55 (36%)