Protein Alignment Scr and Hoxc10

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001295565.1
• Gene: Hoxc10 / 315338
• RGDID: 1307250
• Length: 342
• Species: Rattus norvegicus
• Alignment Length: 388
• Identity: 95/388 - (24%)
• Similarity: 144/388 - (37%)
• Gaps: 113/388 - (29%)

  Fly    32 PGAG---NSSAG-----GSGGGAG--GSGGVVPSGGTNGGQGSAGAATPGANDYF--------PA 78
            ||.|   |.|||     ||....|  ...|:.||.......||...|......|.        |.
  Rat    19 PGGGERYNRSAGMYMQSGSDFNCGVMRGCGLAPSLSKRDEGGSPNLALNTYPSYLSQLDSWGDPK 83

  Fly    79 AA--------------AYTPNLYPNTPQAHY-ANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQ 128
            ||              :|.|::........| |.:.|..|   |:...|:...|:..|.:.:...
  Rat    84 AAYRLEQPVGRPLSSCSYPPSVKEENVCCMYSAEKRAKSG---PEAALYSHPLPESCLGEHEVPV 145

  Fly   129 QQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNS 193
            .....|..:.:...:........:.....:|:...|...::...|..     ||.||       .
  Rat   146 PSYYRASPSYSALDKTPHCAGANEFEAPFEQRASLNPRTEHLESPQL-----GGKVS-------F 198

  Fly   194 ANSNNNNSQSLASPQDLSTRD--ISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSG 256
            ..:..::||: .||.::.|..  :.||.|||...:..|::.:.
  Rat   199 PETPKSDSQT-PSPNEIKTEQSLVGPKASPSESEKERAKTADS---------------------- 240

  Fly   257 SGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNAN 321
                           ||...|::::    .|..:...:||          |:        |..:.
  Rat   241 ---------------SPDTSDNEAK----EEIKAENTTGN----------WL--------TAKSG 268

  Fly   322 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 384
               :::|..||::|||||||||.||.||||.||:||:..:.||:||:||||||||||.||.::
  Rat   269 ---RKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLKKMNR 328

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	36/55 (65%)
Hoxc10	NP_001295565.1	Homeodomain	269..325	CDD:459649	36/55 (65%)