DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and vsx1

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_571408.1 Gene:vsx1 / 30598 ZFINID:ZDB-GENE-990415-205 Length:344 Species:Danio rerio


Alignment Length:122 Identity:39/122 - (31%)
Similarity:54/122 - (44%) Gaps:23/122 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 SDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKE 342
            ||.:..|| :....:||||.:|.                      :.:|.||.:|.:|..||||.
Zfish   128 SDDDCLSG-DRNDGKNSGNSQKR----------------------KKRRHRTVFTSHQLEELEKA 169

  Fly   343 FHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYG 399
            |:...|.....|..:|....|.|.:|::||||||.||:|..|....:.|....|.||
Zfish   170 FNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYG 226

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 24/55 (44%)
vsx1NP_571408.1 Octapeptide motif 37..44
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 49..70
COG5576 101..>221 CDD:227863 36/115 (31%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 127..156 10/50 (20%)
Nuclear localization signal. /evidence=ECO:0000269|PubMed:11331779 147..151 1/25 (4%)
Homeodomain 152..208 CDD:459649 24/55 (44%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 273..344
Blue background indicates that the domain is not in the aligned region.

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