Protein Alignment Scr and msx2b

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_571351.3
• Gene: msx2b / 30531
• ZFINID: ZDB-GENE-980526-492
• Length: 241
• Species: Danio rerio
• Alignment Length: 202
• Identity: 58/202 - (28%)
• Similarity: 85/202 - (42%)
• Gaps: 37/202 - (18%)

  Fly   264 GNVNVPMH-----SPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGE 323
            |:..:|.|     ||...:|....|..:...:|:.|...:::|..:     |.|          :
Zfish    64 GSAGIPKHFMLQTSPVKSESPEPDDCTSWVMNSRYSQTRQESPCPL-----RKH----------K 113

  Fly   324 TKRQ-RTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 387
            |.|: ||.:|..|.|.||::|...:||:...|.|.:.:|.|||.|:||||||||.|.|:..: |.
Zfish   114 TNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQNRRAKAKRLQE-AE 177

  Fly   388 MNIVPYHMGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQS 452
            :..:.....|..||.....:......| || ..:         .|.|  |||......|..|..
Zfish   178 LEKLKLTAKPALHPNFSLPLPLGTQLH-SAVSLY---------GQSY--PYQRPLLPVAPVGLY- 229

  Fly   453 QDGGPIG 459
              |.|:|
Zfish   230 --GTPLG 234

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	27/56 (48%)
msx2b	NP_571351.3	Homeodomain	116..172	CDD:459649	27/55 (49%)