Protein Alignment Scr and msx1a

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_571348.1
• Gene: msx1a / 30527
• ZFINID: ZDB-GENE-980526-312
• Length: 233
• Species: Danio rerio
• Alignment Length: 173
• Identity: 48/173 - (27%)
• Similarity: 77/173 - (44%)
• Gaps: 32/173 - (18%)

  Fly   273 PGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVN-------ANGETKRQRTS 330
            |..|..|:::..|......|..  .|...|:...|:.|.....|.::       .:...::.||.
Zfish    55 PNRGSPDADARLGFSVEVLQLP--VKAESPERSTWVPRARFSPSRLSPPACPLRKHKTNRKPRTP 117

  Fly   331 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK-------EHKMASM 388
            ::..|.|.||::|...:||:...|.|.:.:|.|||.|:||||||||.|.|:       :.|||:.
Zfish   118 FSTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAK 182

  Fly   389 NIVPYHMG---PYG----------HPYHQFDIHPSQ---FAHL 415
            .::|...|   |.|          ||:|:...:.|.   :.|:
Zfish   183 PLLPPAFGISFPAGAHIPAYSAGSHPFHRHSANVSPVGLYTHM 225

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	25/55 (45%)
msx1a	NP_571348.1	Homeodomain	112..168	CDD:459649	25/55 (45%)