DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and otx2a

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_073764513.1 Gene:otx2a / 30462 ZFINID:ZDB-GENE-980526-27 Length:364 Species:Danio rerio


Alignment Length:219 Identity:52/219 - (23%)
Similarity:87/219 - (39%) Gaps:61/219 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   303 QIYPW--------------MKRVHLGTSTVNA----------NGETKRQRTSYTRYQTLELEKEF 343
            ::.||              |..:.||.:|::.          ..:.:|:||::||.|...||..|
Zfish    19 KVSPWSSTMMSYLKQAPYAMNGLGLGGATMDLLHPSVGYPTNPRKQRRERTTFTRTQLDILESLF 83

  Fly   344 HFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMN--IVPYHMGPYGHPYHQFD 406
            ...||.....|.|:|..:.|.|.::::||:|||.|.:::.:.:|.|  |.|....|         
Zfish    84 AKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQSSTNSKIRPAKKKP--------- 139

  Fly   407 IHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQSQDGGPIGGGSVGVGGGAGG 471
             .||:.:. .: .:.||                |..|.|::|...|...|.......|||     
Zfish   140 -SPSRESP-GSESSGHF----------------TPPAVSSSSSSSSSSSGSNPSALSGVG----- 181

  Fly   472 PGSLANGGSNGSGPNSLFASAASS 495
               |.:..|:|:...|:::.|..|
Zfish   182 ---LISSSSSGTPVPSIWSPAPVS 202

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 22/55 (40%)
otx2aXP_073764513.1 None

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