Protein Alignment Scr and hoxc5a

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_571219.2
• Gene: hoxc5a / 30379
• ZFINID: ZDB-GENE-980526-533
• Length: 233
• Species: Danio rerio
• Alignment Length: 251
• Identity: 96/251 - (38%)
• Similarity: 126/251 - (50%)
• Gaps: 57/251 - (22%)

  Fly   158 QQQQQANISCK-----------------YANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLA 205
            :|.|.|: ||:                 ||.:.:..|||....:. :|:....|.:..:.::|.|
Zfish    11 KQTQDAS-SCRMHTFDNYGAHSEFHESNYAYEGLDLGGSFSSQIP-TNSLRREAINTTDRARSSA 73

  Fly   206 SPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPM 270
            :.|  .|:..|...|.|.|.......|:.|:|.                     ....||:.| |
Zfish    74 AVQ--RTQSCSALGSRSFVSTHGYNPLSHGLLS---------------------QKAEGNMEV-M 114

  Fly   271 HSPGG----GDSDSESDSG--NEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRT 329
            ..|.|    .|...|:.|.  .:..|:|..   .::.|||||||.::|:     :...:.||.||
Zfish   115 EKPSGKSRTDDIKMETTSAIKQQTNSTQRQ---NQSQPQIYPWMTKLHM-----SHESDGKRSRT 171

  Fly   330 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM 385
            |||||||||||||||||||||||||||||:.|||.|||||||||||||||||:.|:
Zfish   172 SYTRYQTLELEKEFHFNRYLTRRRRIEIANNLCLNERQIKIWFQNRRMKWKKDSKL 227

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	51/55 (93%)
hoxc5a	NP_571219.2	Homeodomain	167..223	CDD:459649	51/55 (93%)