DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and hoxc4a

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_571197.1 Gene:hoxc4a / 30345 ZFINID:ZDB-GENE-990415-112 Length:268 Species:Danio rerio


Alignment Length:324 Identity:100/324 - (30%)
Similarity:130/324 - (40%) Gaps:129/324 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 FPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAV 140
            ||....|:.|.|.......|.::|...|                           .||.|     
Zfish    17 FPPCEEYSQNSYIPEHSPEYYSRARDSG---------------------------YQHHH----- 49

  Fly   141 AAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSG--------GGGVSGSNNNNNSANSN 197
                 |:|   ..|:...|::|.|  |....:|.|..|.|        |.|.|.|          
Zfish    50 -----QEL---YPPRASYQERQYN--CASIPEPDTQRGHGLPHAGHLLGKGQSAS---------- 94

  Fly   198 NNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGG 262
                   ..|..|       .|||::.                 :||::|.              
Zfish    95 -------CEPPPL-------PLSPATP-----------------SAASSAC-------------- 114

  Fly   263 PGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANG-ETKR 326
              |...|.|.             |.:.|::.        |.:|||||::|:.|...:.|| |.||
Zfish   115 --NQATPEHP-------------NSSASAKQ--------PVVYPWMKKIHVSTVNSSYNGAEPKR 156

  Fly   327 QRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNI 390
            .||:|||.|.||||||||:||||||||||||||:|.|:|||||||||||||||||:|::.:..:
Zfish   157 SRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLVLSERQIKIWFQNRRMKWKKDHRLPNTKV 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 45/52 (87%)
hoxc4aNP_571197.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 70..129 21/128 (16%)
Antp-type hexapeptide 133..138 3/4 (75%)
Homeobox 157..210 CDD:278475 44/52 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 212..268 1/9 (11%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45771
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.910

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