DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scr and hoxb3a

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_571192.2 Gene:hoxb3a / 30339 ZFINID:ZDB-GENE-990415-104 Length:417 Species:Danio rerio


Alignment Length:450 Identity:127/450 - (28%)
Similarity:171/450 - (38%) Gaps:136/450 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 GAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQ--QQQQ 128
            |.:..|||.:     .|      :.|...:.|.|...|       ||   |.....||.  ....
Zfish    15 GYSYQGANGF-----GY------DAPAPAFQNSAHLEG-------DY---QRSACSLQSLGTSAP 58

  Fly   129 QQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNS 193
            .|.|||.......:..:..|..:.||..|....|..::....|....|||||||||:||...:.|
Zfish    59 PQPQHAKTKELNGSCMRPSLPPEHHPPPQVSPPQNTVNVAATNATQQPGGSGGGGVAGSGGTSKS 123

  Fly   194 ANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSG 258
                ::.|.|:|:...| |:.|.|.:..|.                          .|.....| 
Zfish   124 ----SSKSSSMATNPTL-TKQIFPWMKESR--------------------------QNTKQKNS- 156

  Fly   259 VSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGE 323
                         ||....:::||           || |:|:||                 .:..
Zfish   157 -------------SPSASSANAES-----------SG-GEKSPP-----------------GSAA 179

  Fly   324 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASM 388
            :||.||:||..|.:||||||||||||.|.||:|:|:.|.|:||||||||||||||:||:.|...:
Zfish   180 SKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLSERQIKIWFQNRRMKYKKDQKSKGI 244

  Fly   389 NIVPYHMGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGT-GXRLNQLYQEPYQTAAAASAASGYQS 452
            ........|.|.|     ..|.| :.... ::.|..|: . .....:.:|:|.|.|.|.|  ||:
Zfish   245 GSSSGGPSPTGSP-----PLPMQ-SSAGFMNSMHSMGSYDAPSPPSFNKPHQNAYAMSTA--YQN 301

  Fly   453 QDGGPIGG-----------------GSVGVGGGAGGP---GSLANGGSN------GSGPN 486
                |:.|                 |..|..|..|.|   ||....|.|      .:||:
Zfish   302 ----PMKGCPPQQKYGNTPPDYDPHGLQGNSGNYGTPNMQGSPVYVGGNYVDAMPATGPS 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 38/52 (73%)
hoxb3aNP_571192.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 51..135 26/87 (30%)
Antp-type hexapeptide 140..145 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 147..184 15/105 (14%)
Homeobox 184..236 CDD:278475 38/51 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 237..290 10/58 (17%)
DUF4074 353..415 CDD:290032 2/4 (50%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 381..417
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.810

Return to query results.
Submit another query.