Protein Alignment Scr and Alx4

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001100023.1
• Gene: Alx4 / 296511
• RGDID: 1310201
• Length: 399
• Species: Rattus norvegicus
• Alignment Length: 341
• Identity: 80/341 - (23%)
• Similarity: 115/341 - (33%)
• Gaps: 94/341 - (27%)

  Fly   178 GSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLA 242
            |:|...::....:|..|..:.|..|    ||     ..:|:..|:.........|.:|      |
  Rat    67 GAGQQDLAAPLESNAGARGSFNKFQ----PQ-----PPTPQPPPAPPAPPAHLYLQRG------A 116

  Fly   243 AAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNS-----GNGKKNP- 301
            ......|......|||  |....:.||.::......:.|....:|.....||     ..|.|.|
  Rat   117 CKTPPDGSLKLQEGSG--GHNAALQVPCYAKESNLGEPELPPDSEPVGMDNSYLSVKETGAKGPQ 179

  Fly   302 -------PQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAH 359
                   |.  |..|     |.:.::.|:.:|.||::|.||..||||.|....|.....|.::|.
  Rat   180 DRAGAEIPS--PLEK-----TDSESSKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAM 237

  Fly   360 ALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYH------------------------------ 394
            ...|||.::::||||||.||:|..:...|..|..|
  Rat   238 RTDLTEARVQVWFQNRRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWIGNNGA 302

  Fly   395 -----------------MGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPYQTAA 442
                             |.|:.||       |...|. |. |....||.| .:.|.:......||
  Rat   303 ASPVPACVVPCDPVPACMSPHAHP-------PGSGAS-SVSDFLSVSGAGSHVGQTHMGSLFGAA 359

  Fly   443 AAS-AASGYQSQDGGP 457
            ..| ..:||: .:|.|
  Rat   360 GISPGLNGYE-MNGEP 374

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	25/55 (45%)
Alx4	NP_001100023.1	Homeodomain	203..259	CDD:459649	25/55 (45%)
		OAR	375..393	CDD:461067	80/341 (23%)