Protein Alignment Scr and Hoxd4

DIOPT Version :9

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001099355.1
• Gene: Hoxd4 / 288153
• RGDID: 1309690
• Length: 251
• Species: Rattus norvegicus
• Alignment Length: 261
• Identity: 93/261 - (35%)
• Similarity: 116/261 - (44%)
• Gaps: 90/261 - (34%)

  Fly   210 LSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSG------------- 261
            ::::.:.||..|          ..:.:.||.|....|      ::.|||..|
  Rat     8 VNSKYVDPKFPP----------CEEYLQGGYLGEQGA------DYYGSGAQGSDFQPPGLYPRPD 56

  Fly   262 -----------GPGNVNVPMHSPGGGDSDSESDSGNE-------------------------AGS 290
                       |||:.     .|..|.....|..|:.                         .|.
  Rat    57 FGEQPFGGGGPGPGSA-----LPARGHGQEPSGPGSHYSAPGEPCPAPPPAPLPGARACSQPTGP 116

  Fly   291 SQ-NSGNGKKNPPQIYPWMKRVHLGTSTVNAN---GETKRQRTSYTRYQTLELEKEFHFNRYLTR 351
            .| ..|...|.|..:|||||:||:  ::||.|   ||.||.||:|||.|.|||||||||||||||
  Rat   117 KQPPPGTALKQPAVVYPWMKKVHV--NSVNPNYTGGEPKRSRTAYTRQQVLELEKEFHFNRYLTR 179

  Fly   352 RRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKM-------------ASMNIVP-YHMGPYGHPY 402
            ||||||||.|||:|||||||||||||||||:||:             .|.:..| .|:.|....:
  Rat   180 RRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSSSSSSSCSSSAAPSQHLQPMAKDH 244

  Fly   403 H 403
            |
  Rat   245 H 245

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeobox	328..381	CDD:395001	47/52 (90%)
Hoxd4	NP_001099355.1	Homeobox	155..209	CDD:395001	47/53 (89%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR45771
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	6	5.910