Protein Alignment Scr and Hoxd1

DIOPT Version :9

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001099354.1
• Gene: Hoxd1 / 288151
• RGDID: 1309179
• Length: 328
• Species: Rattus norvegicus
• Alignment Length: 425
• Identity: 103/425 - (24%)
• Similarity: 133/425 - (31%)
• Gaps: 184/425 - (43%)

  Fly     8 MSSY-QFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVV------------------ 53
            |||| ::|    ||                    .:|||:||.||.|
  Rat     1 MSSYLEYV----SC--------------------AAGGGSGGVGGDVLGFAPKFCRADARPVALQ 41

  Fly    54 PSGGTNGGQGS------------------AGAATPGANDYFPAAAAYTPNLYPNTPQAHY----- 95
            |:.....|.|:                  |.|..||..   |||:.|.    |.|.:..|
  Rat    42 PAFPLGSGDGAFVSCLPLAAARPTPSPPVAPAQPPGPQ---PAASRYA----PCTLEGAYERGAA 99

  Fly    96 -ANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQ 159
             |:.|.||..|:....|:    |..|   .:.......|.|
  Rat   100 PASAAEYGFLGSGPAFDF----PGAL---GRAADDSGPHVH------------------------ 133

  Fly   160 QQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSV 224
                     ||...|.   |.||....|...:.:|         .|.|...          |:.:
  Rat   134 ---------YATSAVF---SSGGSFLLSGQVDFAA---------FAEPGPF----------PACL 167

  Fly   225 VESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAG 289
            .|.                               ..|.||.......:||.....:...||..|.
  Rat   168 KEP-------------------------------ADGHPGPFQTVSPAPGACPKPASPTSGLPAA 201

  Fly   290 SSQNSGNGKKNPPQIYPWM--KRVHLGTSTVNANGETKRQ---RTSYTRYQTLELEKEFHFNRYL 349
            .|            .:.||  ||.....|.::..|.|...   ||:::..|..|||||||||:||
  Rat   202 HS------------TFEWMKVKRNAPKKSKLSEYGATSPSSAIRTNFSTKQLTELEKEFHFNKYL 254

  Fly   350 TRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 384
            ||.||:|||:.|.|.:.|:||||||||||.||..:
  Rat   255 TRARRMEIANCLQLNDTQVKIWFQNRRMKQKKRER 289

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeobox	328..381	CDD:395001	34/52 (65%)
Hoxd1	NP_001099354.1	COG5576	<208..325	CDD:227863	42/82 (51%)
		Homeobox	233..285	CDD:278475	34/51 (67%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E2759_KOG0489
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.810