Protein Alignment Scr and Hoxb9

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001093967.1
• Gene: Hoxb9 / 287647
• RGDID: 1306158
• Length: 250
• Species: Rattus norvegicus
• Alignment Length: 256
• Identity: 80/256 - (31%)
• Similarity: 108/256 - (42%)
• Gaps: 63/256 - (24%)

  Fly   150 QQQHPQQQQQQQQANI-SCKYAND---------PVTPGGSGGGGVSGSNNNNNSANSNNNNSQSL 204
            |..:|:|....:..:. ||.:...         |::|..||                      ||
  Rat    32 QYANPRQPGHAEHLDFPSCSFQPKAPVFGASWAPLSPHASG----------------------SL 74

  Fly   205 ASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVP 269
            .|.       ..|.|.|.....:.:|.|...:.....|.||...| ........:.|.||.
  Rat    75 PSV-------YHPYLQPQGAPAAESRYLRTWLEPAPRAEAAPGQG-QAAVKAEPLLGAPGE---- 127

  Fly   270 MHSPGGGDSDSESDSGNEAG-SSQNSGNG----------KKNPPQIYPWMKRVHLGTSTVNANGE 323
            :...|..:...|:.:|.||. |:|.:|.|          |:.|.|..|....:|..:|
  Rat   128 LLKQGTPEYSLETSAGREAVLSNQRAGYGDNKICEGSEDKERPDQTNPSANWLHARSS------- 185

  Fly   324 TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 384
             :::|..||:||||||||||.||.||||.||.|:|..|.|:|||:||||||||||.||.:|
  Rat   186 -RKKRCPYTKYQTLELEKEFLFNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMNK 245

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	38/55 (69%)
Hoxb9	NP_001093967.1	Hox9_act	1..172	CDD:461369	35/173 (20%)
		Homeodomain	186..242	CDD:459649	38/55 (69%)