DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scr and GBX1

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001092304.1 Gene:GBX1 / 2636 HGNCID:4185 Length:363 Species:Homo sapiens


Alignment Length:421 Identity:113/421 - (26%)
Similarity:159/421 - (37%) Gaps:119/421 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 GNSSAGGSGGGAGGSGGVVPSGGTNGGQGSA-------GAATPGANDY----FPAAAAYTP---- 84
            |.|:.||:|||.|            ||.|:|       |...|.:...    :|....|.|    
Human     6 GGSAPGGNGGGGG------------GGPGTAFSIDSLIGPPPPRSGHLLYTGYPMFMPYRPLVLP 58

  Fly    85 ----------NLYPNTPQAHYANQ-----AAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHA 134
                      .|.|..|.|.:|.:     .|..||..|.||..|...|............|:..|
Human    59 QALAPAPLPAGLPPLAPLASFAGRLTNTFCAGLGQAVPSMVALTTALPSFAEPPDAFYGPQELAA 123

  Fly   135 HAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNN 199
            .||||.|.      |.:.:|:...::.:..:..    |.:.|.                      
Human   124 AAAAAAAT------AARNNPEPGGRRPEGGLEA----DELLPA---------------------- 156

  Fly   200 NSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPG 264
             .:.:|.|........| :..||...|....|.::..|.   |:|...||......||       
Human   157 -REKVAEPPPPPPPHFS-ETFPSLPAEGKVYSSDEEKLE---ASAGDPAGSEQEEEGS------- 209

  Fly   265 NVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTST---------VNA 320
                      ||||:.:....:.||     |.|....|:  |.:|. .|||..         |.|
Human   210 ----------GGDSEDDGFLDSSAG-----GPGALLGPK--PKLKG-SLGTGAEEGAPVTAGVTA 256

  Fly   321 -NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 384
             .|:::|:||::|..|.||||||||..:||:...|.:|||||.|:|.|:||||||||.|||   :
Human   257 PGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWK---R 318

  Fly   385 MASMNIVPYHMGPYGHP--YHQFDIHPSQFA 413
            :.:.|:......|..:|  .....:|.::||
Human   319 IKAGNVSSRSGEPVRNPKIVVPIPVHVNRFA 349

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 33/52 (63%)
GBX1NP_001092304.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 12/36 (33%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..265 38/198 (19%)
Homeobox 264..317 CDD:306543 32/52 (62%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
32.810

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