Protein Alignment Scr and Hoxc8

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001170797.2
• Gene: Hoxc8 / 24460
• RGDID: 2821
• Length: 242
• Species: Rattus norvegicus
• Alignment Length: 214
• Identity: 79/214 - (36%)
• Similarity: 102/214 - (47%)
• Gaps: 53/214 - (24%)

  Fly   176 PGGSGGGGVSGSN------NNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNK 234
            ||||..|....|:      ::..|..||:...|   :|..||....:.|...   .|::.|.
  Rat    42 PGGSAPGFQHASHHVQDFFHHGTSGISNSGYQQ---NPCSLSCHGDASKFYG---YEALPRQ--- 97

  Fly   235 GVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKK 299
                 ||..|...|.:               |..|         |.:|.:...:...|...|...
  Rat    98 -----SLYGAQQEASV---------------VQYP---------DCKSSANTNSSEGQGHLNQNS 133

  Fly   300 NPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLT 364
            :|..::||| |.|       |.|. :..|.:|:|||||||||||.||.||||:||||::|||.||
  Rat   134 SPSLMFPWM-RPH-------APGR-RSGRQTYSRYQTLELEKEFLFNPYLTRKRRIEVSHALGLT 189

  Fly   365 ERQIKIWFQNRRMKWKKEH 383
            |||:||||||||||||||:
  Rat   190 ERQVKIWFQNRRMKWKKEN 208

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	42/55 (76%)
Hoxc8	NP_001170797.2	Homeodomain	150..206	CDD:459649	42/55 (76%)