DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Dbx2

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_997416.2 Gene:Dbx2 / 223843 MGIID:107445 Length:377 Species:Mus musculus


Alignment Length:245 Identity:65/245 - (26%)
Similarity:94/245 - (38%) Gaps:67/245 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   210 LSTRDISPKLS--------PSSVV-------ESVARSL-------NKGVLGGS-LAAAAAAAGLN 251
            ||.|..||:|.        ||:|.       :.||.|.       ..|.||.| |......||..
Mouse    47 LSLRTRSPRLPGQRARTMLPSAVAAQAGAYWDVVASSALFGLPAPGFGSLGKSFLIENLLRAGAG 111

  Fly   252 NNHSGSGVSGGPG----------NVNVPMH-SPGG------------GDSDSESDSGNEAGS--- 290
            ..|:.......||          ...||:. .|.|            |.:..|.||..:..:   
Mouse   112 PTHAPPPPRPAPGPECPQLRPLPASPVPLKLCPAGPFGVRWAFQMPPGRAPGERDSAFQPSAPVP 176

  Fly   291 ------------SQNSGNGKKNPPQIYPWMKRVH-LGTSTVNANGETKR---QRTSYTRYQTLEL 339
                        |...|...:.|.....:.:..| |...|.::|.:.:|   :|..::..|...|
Mouse   177 SKPFLLSAPPFYSACCGGSCRRPASPTAFSREEHGLPLLTQDSNSKARRGILRRAVFSEEQRKAL 241

  Fly   340 EKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK--KEHKMAS 387
            ||.|...:|:::..|.::|.:|.|.|.|:|||||||||||:  ||.::.|
Mouse   242 EKMFQKQKYISKTDRRKLAVSLGLKESQVKIWFQNRRMKWRNSKEKEVLS 291

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 25/60 (42%)
Dbx2NP_997416.2 COG5576 <217..334 CDD:227863 29/75 (39%)
Homeodomain 229..283 CDD:459649 24/53 (45%)

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