Protein Alignment Scr and pha-2

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_508131.4
• Gene: pha-2 / 187454
• WormBaseID: WBGene00004011
• Length: 214
• Species: Caenorhabditis elegans
• Alignment Length: 207
• Identity: 56/207 - (27%)
• Similarity: 86/207 - (41%)
• Gaps: 58/207 - (28%)

  Fly   200 NSQSLASPQDLSTRDISPKLSPSSVVESVARSL------NKGVLGGSL--------AAAAAAAGL 250
            ::.|...|:..|...| |..|..|:.||...:|      ||.:..|:|        .:...||.|
 Worm    14 DTPSKEKPETSSESPI-PTGSECSLNESSDTTLDQKMEPNKKMFNGTLDFNPWICHVSQQLAAQL 77

  Fly   251 NNNHSGSGVSGGPG-----NVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQ---IYPW 307
            :.|  |....|.|.     |:||                        |...|....|:   :||:
 Worm    78 SQN--GKNRPGAPNQVPLLNMNV------------------------NQTMGNMWDPRLSWLYPY 116

  Fly   308 MKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWF 372
            |.:         :..:.|..:..:|..||..||.:|..::||:.:.|.::|.:|.|:|||:|.||
 Worm   117 MSK---------SPQKRKGGQIRFTNEQTDALEHKFDSHKYLSPQERKKLAKSLSLSERQVKTWF 172

  Fly   373 QNRRMKWKKEHK 384
            ||||.||::..|
 Worm   173 QNRRAKWRRVRK 184

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	25/55 (45%)
pha-2	NP_508131.4	Homeodomain	130..181	CDD:459649	24/50 (48%)