DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and nob-1

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001369824.1 Gene:nob-1 / 176641 WormBaseID:WBGene00003779 Length:243 Species:Caenorhabditis elegans


Alignment Length:201 Identity:57/201 - (28%)
Similarity:86/201 - (42%) Gaps:42/201 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 SPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNN------------HSGSGVSGGP----G 264
            ||:|:|||....:..:......|.|....|...|:..|            .:|....|.|    .
 Worm    56 SPQLAPSSTGMVMPGTAGMYGFGPSRMPTANEFGMMMNPVYTDFYQNPLASTGWYSYGQPYQFTA 120

  Fly   265 NVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRT 329
            |.::|.......|....:.:|:.|.::.|:.       ...||         .::.:|:.|||  
 Worm   121 NYSIPSLDGNLSDITIPTTAGSSAATTPNAA-------MHLPW---------AISHDGKKKRQ-- 167

  Fly   330 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYH 394
            .|.:.|...||.|:..|:|||.:||.|::..|.|.|:|:|:||||||||.||..:.        |
 Worm   168 PYKKDQISRLEYEYSVNQYLTNKRRSELSAQLMLDEKQVKVWFQNRRMKDKKLRQR--------H 224

  Fly   395 MGPYGH 400
            .||:.|
 Worm   225 SGPFPH 230

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 25/52 (48%)
nob-1NP_001369824.1 Homeobox 165..219 CDD:395001 28/55 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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