DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and ceh-13

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_498655.1 Gene:ceh-13 / 176069 WormBaseID:WBGene00000437 Length:202 Species:Caenorhabditis elegans


Alignment Length:134 Identity:51/134 - (38%)
Similarity:69/134 - (51%) Gaps:23/134 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   262 GPGNVNVP-----MHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWM--KRVHLGTS--- 316
            |.|:|:.|     :..|....|:|.::......:||::         .|.||  ||.....:   
 Worm    53 GNGHVSPPATASGLSPPASRSSNSSAELPTGVTASQHN---------TYKWMHTKRSQRPAAPKK 108

  Fly   317 -TVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWK 380
             .::.||   ..||::|.:|..|||||||..:|:.|.||.|||..|.|.|.|:||||||||||.|
 Worm   109 KVIDENG---TNRTNFTTHQLTELEKEFHTAKYVNRTRRTEIASNLKLQEAQVKIWFQNRRMKEK 170

  Fly   381 KEHK 384
            |..|
 Worm   171 KREK 174

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 32/52 (62%)
ceh-13NP_498655.1 Homeobox 118..164 CDD:278475 26/45 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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