Protein Alignment Scr and ceh-43

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_001338832.1
• Gene: ceh-43 / 175581
• WormBaseID: WBGene00000463
• Length: 282
• Species: Caenorhabditis elegans
• Alignment Length: 190
• Identity: 57/190 - (30%)
• Similarity: 78/190 - (41%)
• Gaps: 47/190 - (24%)

  Fly   219 LSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHS-PGGGDSDSES 282
            :.||...|.||         |.....:..|...:|.:||.||     ...|.|: |  ..|.:.:
 Worm     1 MDPSKGFEYVA---------GDYYQTSGVAPPTSNGAGSNVS-----PYFPYHAYP--TSSTNGA 49

  Fly   283 DSGNEAGSSQNS--------GNGKKNPPQIYPWMKRVHLGTSTV-------NANGETKRQ-RTSY 331
            ..|:..|:.|.:        |.| .:|.:.:|    .|..|..|       |..|:..|: ||.|
 Worm    50 TGGSMYGTPQQTSAYAMYPPGPG-SSPEEAFP----EHTTTKIVEGCEAKYNVKGKKMRKPRTIY 109

  Fly   332 TRYQTLELEKEFHFNRYLTRRRRIEIAHALCL---------TERQIKIWFQNRRMKWKKE 382
            ...|...|:|:|...:||....|..:||.|.|         ||.|:||||||||.|.||:
 Worm   110 NSSQLQMLQKKFQKTQYLALPDRAALAHELGLSQTQRAQPITEFQVKIWFQNRRSKQKKQ 169

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	27/65 (42%)
ceh-43	NP_001338832.1	Homeodomain	103..168	CDD:459649	27/64 (42%)