DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Hoxd13

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_032301.2 Gene:Hoxd13 / 15433 MGIID:96205 Length:339 Species:Mus musculus


Alignment Length:369 Identity:87/369 - (23%)
Similarity:133/369 - (36%) Gaps:79/369 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 GAGNSSAGGSGGGAGGSGGVVPS---GGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAH 94
            ||..:|:..|....|...|.:.:   .||:.|:.:|.||...|     ||||.:...||.|.:  
Mouse    20 GAAPASSSSSVAAPGQCRGFLSAPVFAGTHSGRAAAAAAAAAA-----AAAAASSFAYPGTSE-- 77

  Fly    95 YANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQ 159
                 ..|...:.........:|:..:.::..       |.||||.||                 
Mouse    78 -----RTGSSSSSSSSAVIATRPEAPVAKECP-------APAAAATAA----------------- 113

  Fly   160 QQQANISCKYANDPVTPGGSG-GGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLS--- 220
                          ..||... |.|....|...:...|:....|..|...       ||..|   
Mouse   114 --------------APPGAPALGYGYHFGNGYYSCRMSHGVGLQQNALKS-------SPHASLGG 157

  Fly   221 -PSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDS 284
             |......|:...:..|....:.|.|........:: |.....||.::: :.:.|.|:...|:..
Mouse   158 FPVEKYMDVSGLASSSVPTNEVPARAKEVSFYQGYT-SPYQHVPGYIDM-VSTFGSGEPRHEAYI 220

  Fly   285 GNEAGSSQNSGNG-------KKNPPQIYPWMKRVHLGTSTVN-----ANGETKRQRTSYTRYQTL 337
            ..|...|....||       .|:.||...:.|....|...:|     .....:::|..||:.|..
Mouse   221 SMEGYQSWTLANGWNSQVYCAKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYTKLQLK 285

  Fly   338 ELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 381
            |||.|:..|:::.:.:|..|:.|..|:|||:.|||||||:|.||
Mouse   286 ELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKK 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 24/55 (44%)
Hoxd13NP_032301.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 4/12 (33%)
HoxA13_N <121..168 CDD:463521 11/53 (21%)
Homeodomain 273..329 CDD:459649 24/55 (44%)

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