DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Hoxc6

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_006520531.1 Gene:Hoxc6 / 15425 MGIID:96197 Length:243 Species:Mus musculus


Alignment Length:237 Identity:89/237 - (37%)
Similarity:110/237 - (46%) Gaps:67/237 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   192 NSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSG 256
            ||..:|.:.|..||..|     |:.|.::.:|......|         ..:...||...|..:| 
Mouse     2 NSYFTNPSLSCHLAGGQ-----DVLPNVALNSTAYDPVR---------HFSTYGAAVAQNRIYS- 51

  Fly   257 SGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSS-------------QN--------------- 293
                       .|.:||......|.|....:.||:             ||               
Mouse    52 -----------TPFYSPQENVVFSSSRGPYDYGSNSFYQEKDMLSNCRQNTLGHNTQTSIAQDFS 105

  Fly   294 SGNGKKNPP------QIYPWMKRVHL-------GTSTVNANGETKRQRTSYTRYQTLELEKEFHF 345
            |..|:..|.      ||||||:|::.       |:..|....:.:|.|..|:|||||||||||||
Mouse   106 SEQGRTAPQDQKASIQIYPWMQRMNSHSVCFVPGSLGVGYGADRRRGRQIYSRYQTLELEKEFHF 170

  Fly   346 NRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMAS 387
            |||||||||||||:|||||||||||||||||||||||..:.|
Mouse   171 NRYLTRRRRIEIANALCLTERQIKIWFQNRRMKWKKESNLTS 212

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 48/52 (92%)
Hoxc6XP_006520531.1 Homeobox 153..206 CDD:395001 48/52 (92%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000007
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.810

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