DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Hoxa4

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_032291.1 Gene:Hoxa4 / 15401 MGIID:96176 Length:285 Species:Mus musculus


Alignment Length:384 Identity:122/384 - (31%)
Similarity:144/384 - (37%) Gaps:163/384 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 PSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNT---PQAHYANQA---AYGGQGNPDMVDY 112
            |.||..||.|:.|.. ||...  |.:|.:.|...|:.   |.|:||.:|   :|.|...|     
Mouse    25 PHGGPGGGDGAVGGG-PGYPR--PQSAPHLPAPNPHAARQPPAYYAPRAREPSYPGGLYP----- 81

  Fly   113 TQLQPQRLLLQQQQQQQQQQHAHAAA-------AVAAQQQQQLAQQQHPQQQQQQQQANISCKYA 170
                                 |.|||       |..|:.:|..|...||....|.......|  |
Mouse    82 ---------------------APAAACPYACRGASPARPEQSPAPGAHPSPAPQPPAPPRHC--A 123

  Fly   171 NDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKG 235
            ..|.||..:.||...                   |.|  |...|..|                  
Mouse   124 PGPTTPAVATGGSAP-------------------ACP--LLLADQGP------------------ 149

  Fly   236 VLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKN 300
                                     .||                                .||: 
Mouse   150 -------------------------AGP--------------------------------KGKE- 156

  Fly   301 PPQIYPWMKRVHLGTSTVNAN---GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALC 362
             |.:|||||::|:  |.||::   ||.||.||:|||.|.|||||||||||||||||||||||.||
Mouse   157 -PVVYPWMKKIHV--SAVNSSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLC 218

  Fly   363 LTERQIKIWFQNRRMKWKKEH-----KMASMNIVPYHMGPYG-------HPYHQFDIHP 409
            |:|||:|||||||||||||:|     ||.|.|......||.|       ||:.    ||
Mouse   219 LSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNTASAPAGPPGKAQTHSPHPHP----HP 273

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 48/55 (87%)
Hoxa4NP_032291.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..70 17/47 (36%)
PHA03247 <43..161 CDD:223021 40/245 (16%)
Antp-type hexapeptide 159..164 3/4 (75%)
Homeodomain 181..237 CDD:459649 48/55 (87%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 238..285 12/40 (30%)

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