DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Hoxa3

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_034582.1 Gene:Hoxa3 / 15400 MGIID:96175 Length:443 Species:Mus musculus


Alignment Length:304 Identity:90/304 - (29%)
Similarity:119/304 - (39%) Gaps:89/304 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   269 PMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNP--------PQIYPWMKRVHLGT---STVNANG 322
            |..:|......|.......|.|:....:..|:|        .||:||||.....|   ::.:::|
Mouse   113 PAPTPAAPPPPSSVSPPQSANSNPTPASTAKSPLLNSPTVGKQIFPWMKESRQNTKQKTSGSSSG 177

  Fly   323 E-------------TKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQN 374
            |             :||.||:||..|.:||||||||||||.|.||:|:|:.|.||||||||||||
Mouse   178 ESCAGDKSPPGQASSKRARTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQN 242

  Fly   375 RRMKWKKEHKMASM-----------------------------NIVPYH-----------MGPYG 399
            ||||:||:.|...|                             |.|||.           .|.||
Mouse   243 RRMKYKKDQKGKGMLTSSGGQSPSRSPVPPGAGGYLNSMHSLVNSVPYEPQSPPPFSKPPQGAYG 307

  Fly   400 HPYHQFDI--------HPSQFAHLSAXDAWHFSGT--------GXRLNQLYQEPYQTAAAASAAS 448
            .|...:..        .|.|..:.:| ..  ..||        | :.|..|..|:...:......
Mouse   308 LPPASYPAPLPSCAPPPPPQKRYTAAGSG--AGGTPDYDPHAHGLQGNGSYGTPHLQGSPVFVGG 370

  Fly   449 GY--QSQDGGPIGG-----GSVGVGGGAGGPGSLANGGSNGSGP 485
            .|  ...:.||:.|     .:.......||.|.|.:|..:|.||
Mouse   371 SYVEPMSNSGPLFGLTHLPHTTSAAMDYGGTGPLGSGHHHGPGP 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 39/52 (75%)
Hoxa3NP_034582.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 74..151 7/37 (19%)
Antp-type hexapeptide 156..161 3/4 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 163..197 5/33 (15%)
COG5576 <182..309 CDD:227863 52/126 (41%)
Homeobox 196..249 CDD:365835 39/52 (75%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 248..354 18/107 (17%)
DUF4074 378..441 CDD:372548 11/37 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 401..443 6/14 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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