DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Hoxa13

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_032290.1 Gene:Hoxa13 / 15398 MGIID:96173 Length:386 Species:Mus musculus


Alignment Length:403 Identity:101/403 - (25%)
Similarity:149/403 - (36%) Gaps:108/403 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 QNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNTPQA 93
            :|..||..::|..:...|.|:||        ||.....||..|.|....||||            
Mouse    33 KNMEGAAAAAAAAAAAAAAGAGG--------GGFPHPAAAAAGGNFSVAAAAA------------ 77

  Fly    94 HYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQ 158
              |..||...|....|.....|.|...........:....|.||||.||                
Mouse    78 --AAAAAAANQCRNLMAHPAPLAPGAAAAYSSAPGEAPPSAAAAAAAAA---------------- 124

  Fly   159 QQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISP--KLSP 221
               .|..:...|:....||.:|..|...:...:..:.:..::|...|.|.........|  ::.|
Mouse   125 ---AAAAAAAAASSSGGPGPAGPAGAEAAKQCSPCSAAAQSSSGPAALPYGYFGSGYYPCARMGP 186

  Fly   222 -SSVVESVARSLNKGVLGGSLAAAAA----------------------------AAGLNNNHSGS 257
             .:.::|.|:.       .|.|||.|                            |||..::|...
Mouse   187 HPNAIKSCAQP-------ASAAAAFADKYMDTAGPAAEEFSSRAKEFAFYHQGYAAGPYHHHQPV 244

  Fly   258 GVSGGPGNVNVPMHSPG-GGDSDSESDS-GNEAGSSQ-----NSGNGKKNPP--QIYPWMKRVHL 313
                 ||.:::|: .|| ||..:|..:. |....|.|     |..||:...|  |..|    .||
Mouse   245 -----PGYLDMPV-VPGLGGPGESRHEPLGLPMESYQPWALPNGWNGQMYCPKEQTQP----PHL 299

  Fly   314 GTSTV----------NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQI 368
            ..||:          ::....:::|..||:.|..|||:|:..|:::|:.:|..|:....|:|||:
Mouse   300 WKSTLPDVVSHPSDASSYRRGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQV 364

  Fly   369 KIWFQNRRMKWKK 381
            .|||||||:|.||
Mouse   365 TIWFQNRRVKEKK 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 24/55 (44%)
Hoxa13NP_032290.1 HoxA13_N <151..222 CDD:463521 12/77 (16%)
Homeodomain 321..377 CDD:459649 24/55 (44%)

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