DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Hoxa1

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_034579.3 Gene:Hoxa1 / 15394 MGIID:96170 Length:336 Species:Mus musculus


Alignment Length:358 Identity:92/358 - (25%)
Similarity:133/358 - (37%) Gaps:101/358 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 GQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQ 125
            |.|.:|..         :|.||..:....|.|:...:..:.||.             .|.|:.:.
Mouse    16 GSGDSGTC---------SARAYPSDHGITTFQSCAVSANSCGGD-------------DRFLVGRG 58

  Fly   126 QQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNN 190
            .|.....|.|           ......|||....|...|:...|::       |..|...|:.|.
Mouse    59 VQISSPHHHH-----------HHHHHHHPQTATYQTSGNLGISYSH-------SSCGPSYGAQNF 105

  Fly   191 NNSANSNNNNSQSLASPQDLSTRDIS---PKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNN 252
            :........|.::          |:|   |..:|:             |..|:|:...    :.:
Mouse   106 SAPYGPYGLNQEA----------DVSGGYPPCAPA-------------VYSGNLSTPM----VQH 143

  Fly   253 NHSGSGVSGGP-GNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGK---------KNPPQIYPW 307
            :|...|.:||. |:.....||.|.........:.|.:.|..::.:.:         .:|.|.:.|
Mouse   144 HHHHQGYAGGTVGSPQYIHHSYGQEQQTLALATYNNSLSPLHASHQEACRSPASETSSPAQTFDW 208

  Fly   308 MKRVHLGTSTVNAN-------------GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAH 359
            ||        |..|             |:....||::|..|..|||||||||:||||.||:|||.
Mouse   209 MK--------VKRNPPKTGKVGEYGYVGQPNAVRTNFTTKQLTELEKEFHFNKYLTRARRVEIAA 265

  Fly   360 ALCLTERQIKIWFQNRRMKWKKEHKMASMNIVP 392
            :|.|.|.|:||||||||||.||..|...:.|.|
Mouse   266 SLQLNETQVKIWFQNRRMKQKKREKEGLLPISP 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 36/52 (69%)
Hoxa1NP_034579.3 COG5576 177..>287 CDD:227863 46/117 (39%)
Homeobox 234..287 CDD:365835 36/52 (69%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X14
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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