DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scr and Gsx2

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_573555.1 Gene:Gsx2 / 14843 MGIID:95843 Length:305 Species:Mus musculus


Alignment Length:373 Identity:94/373 - (25%)
Similarity:114/373 - (30%) Gaps:184/373 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 NHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGANDYF---PAAAAYTPNL----- 86
            :|..:....||..||..|.:|..|..||..||.|    |.|.....|   |..|.:.|.:     
Mouse    67 SHLHSSRPPAGAGGGATGTAGAAVAGGGVAGGTG----ALPLLKSQFSPAPGDAQFCPRVSHAHH 127

  Fly    87 YPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQ 151
            :.:.||.|:                            ...|.||...|.||||.||         
Mouse   128 HHHPPQHHH----------------------------HHHQPQQPGSAAAAAAAAA--------- 155

  Fly   152 QHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDIS 216
                                                                             
Mouse   156 ----------------------------------------------------------------- 155

  Fly   217 PKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNN-NHSGSGVSGGPGNVNVPMH----SPGGG 276
                                     |||||||.|.: .|.....:....|::.|..    |.||.
Mouse   156 -------------------------AAAAAAAALGHPQHHAPVCAATTYNMSDPRRFHCLSMGGS 195

  Fly   277 DSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEK 341
            |                                     ||.| .||  ||.||::|..|.||||:
Mouse   196 D-------------------------------------TSQV-PNG--KRMRTAFTSTQLLELER 220

  Fly   342 EFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMN 389
            ||..|.||:|.||||||..|.|:|:|:||||||||:|.|||.|.||.|
Mouse   221 EFSSNMYLSRLRRIEIATYLNLSEKQVKIWFQNRRVKHKKEGKGASRN 268

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 33/52 (63%)
Gsx2NP_573555.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 115..151 10/63 (16%)
Homeobox 207..259 CDD:278475 33/51 (65%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 259..305 7/10 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0489
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.