DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and LOC1277926

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_317438.4 Gene:LOC1277926 / 1277926 VectorBaseID:AGAMI1_003079 Length:596 Species:Anopheles gambiae


Alignment Length:423 Identity:99/423 - (23%)
Similarity:156/423 - (36%) Gaps:125/423 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 NSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVV--PSGGTNGGQGSAGAATPGANDY-- 75
            |..:|..|..::|.  |..:..|:...:...:..:.|.:  ||..::.....|..::|..:.|  
Mosquito   241 NGSSSATPLPLHPY--HTDSDCSTQDSTSAPSPATYGDIASPSSASSAMTTPATTSSPTGSVYDY 303

  Fly    76 ----------------FPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDMVDYTQLQPQRLLLQQ 124
                            |.|||:| |.|:.....:|...||                   :|:   
Mosquito   304 SRKASALDHRAALLNGFSAAASY-PKLHEEIINSHRKFQA-------------------KLI--- 345

  Fly   125 QQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGSGGGGVSGSNN 189
               :.|.:.|.||||.||...........|       .....||..:. :....:|.|.::||.:
Mosquito   346 ---ESQTKAALAAAATAAAAAASATPHNMP-------PLGSLCKTVSQ-IGQHVAGTGSLNGSGS 399

  Fly   190 NNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNH 254
            ..|.|::..:.:.:.|.|    |....||.:|||                           ..|.
Mosquito   400 ATNGASNGGSGAPATAKP----TPKPIPKPAPSS---------------------------ETNG 433

  Fly   255 SGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYP-WM------KRVH 312
            |.|..:|                .:|..|:.:|..|::   :|.:|...::| |:      .|..
Mosquito   434 SSSQDAG----------------MESSDDAKSETSSTK---DGSENGSNLWPAWVYCTRYSDRPS 479

  Fly   313 LG-----TSTVNANG--ETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKI 370
            .|     |......|  |.||.||:::..|...|:.||:.|||||.:||..::..|.|.|.||||
Mosquito   480 SGPRYRRTKQPKEKGDSEEKRPRTAFSNAQLQRLKNEFNENRYLTEKRRQTLSAELGLNEAQIKI 544

  Fly   371 WFQNRRMKWKK---EHKMASMNIVPYHMGPYGH 400
            ||||:|.|.||   |....::.::.  .|.|.|
Mosquito   545 WFQNKRAKIKKSSSEKNPLALQLMA--QGLYNH 575

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 28/55 (51%)
LOC1277926XP_317438.4 None

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