DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Scr and Scr

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_311616.2 Gene:Scr / 1272726 VectorBaseID:AGAMI1_014121 Length:372 Species:Anopheles gambiae


Alignment Length:456 Identity:237/456 - (51%)
Similarity:265/456 - (58%) Gaps:123/456 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDPDCFAMSSYQFVNSLASCYPQQMNPQQNHPGAGNSSAGGSGGGAGGSGGVVPSGGTNGGQGSA 65
            ||.:.|.|||||||||:|||||   |..||    .|||...:|.          .||.|.|    
Mosquito     1 MDANNFVMSSYQFVNSIASCYP---NNSQN----TNSSPNTAGS----------QGGQNDG---- 44

  Fly    66 GAATPGANDYFPAAAAYTPNLYPNTP-QAHYANQ-------------------AAYGGQGNPDMV 110
                     ||| .:.|.||:||.|| ||||:.|                   |..||..:.|||
Mosquito    45 ---------YFP-PSTYAPNIYPGTPHQAHYSPQSYNPLAGAGATSVNSASTGAVGGGHQSTDMV 99

  Fly   111 DYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVT 175
            ||||||||:.||.||||.|        :|:.:|                      |||||::   
Mosquito   100 DYTQLQPQKFLLSQQQQPQ--------SALTSQ----------------------SCKYASE--- 131

  Fly   176 PGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTR---------------DISPKLSPSSVV 225
                      |.:...|..|:|||||.:  |||||||.               :|||||||.|||
Mosquito   132 ----------GPSTGTNVINNNNNNSTT--SPQDLSTASGGSSGANDGNNGRPEISPKLSPGSVV 184

  Fly   226 ESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGS 290
            |||:|||.    .|:.:.|.:::..|||.|.   ......||:|:.||......|:.|||.|.||
Mosquito   185 ESVSRSLK----SGNPSTAVSSSSTNNNTSN---ISNRNQVNLPLASPEEESEASDDDSGTEGGS 242

  Fly   291 SQNSG--NGKKN--PPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTR 351
            ||..|  :.||.  ||.|||||||||:|.||||||||||||||||||||||||||||||||||||
Mosquito   243 SQGGGGSSSKKGGPPPHIYPWMKRVHIGQSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTR 307

  Fly   352 RRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGHPYHQFDIHPSQFAHLS 416
            ||||||||||||||||||||||||||||||||||||||||||||.|||||| |||||||||||||
Mosquito   308 RRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMSPYGHPY-QFDIHPSQFAHLS 371

  Fly   417 A 417
            |
Mosquito   372 A 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 55/55 (100%)
ScrXP_311616.2 None

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