DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Cdx2

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_031699.2 Gene:Cdx2 / 12591 MGIID:88361 Length:311 Species:Mus musculus


Alignment Length:268 Identity:75/268 - (27%)
Similarity:100/268 - (37%) Gaps:81/268 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   238 GGSLAAAAAAAGLNNNHSGSGVS-GGPGNVNV---PMHSPGGGDSDSESDSG------------- 285
            ||:.||.|.|.|||.....:.:. ..|...:.   |.|.|....:.....||             
Mouse    83 GGAAAANAVAHGLNGGSPAAAMGYSSPAEYHAHHHPHHHPHHPAASPSCASGLLQTLNLGPPGPA 147

  Fly   286 NEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETK-RQRTSYTRYQTLELEKEFHFNRYL 349
            ..|.:.|.|.:|::.  .:..||::....:........|| :.|..||.:|.|||||||||:||:
Mouse   148 ATAAAEQLSPSGQRR--NLCEWMRKPAQQSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHFSRYI 210

  Fly   350 TRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASMNIVPYHMGPYGHPYHQFDIHPSQFAH 414
            |.||:.|:|..|.|:|||:||||||||.|.:|..|....                          
Mouse   211 TIRRKSELAATLGLSERQVKIWFQNRRAKERKIKKKQQQ-------------------------- 249

  Fly   415 LSAXDAWHFSGTGXRLNQLYQEPYQTAAAASAASGYQSQDG----------------GPIGGGSV 463
                          :..|..|:|.|.....|     |.|.|                |.:.|...
Mouse   250 --------------QQQQQQQQPPQPPPQPS-----QPQPGALRSVPEPLSPVTSLQGSVPGSVP 295

  Fly   464 GVGGGAGG 471
            ||.|.|||
Mouse   296 GVLGPAGG 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 35/56 (63%)
Cdx2NP_031699.2 Caudal_act 13..178 CDD:461413 21/96 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 111..151 5/39 (13%)
Interaction with DNA. /evidence=ECO:0000250|UniProtKB:Q99626 185..215 18/29 (62%)
Homeodomain 187..242 CDD:459649 34/54 (63%)
Interaction with 5-mCpG DNA. /evidence=ECO:0000250|UniProtKB:Q99626 227..241 11/13 (85%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 239..311 19/110 (17%)
4S motif, modulates transactivation activity and protein stability. /evidence=ECO:0000269|PubMed:16027724 281..293 1/11 (9%)

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