Protein Alignment Scr and Msx3

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_446164.1
• Gene: Msx3 / 114504
• RGDID: 620932
• Length: 204
• Species: Rattus norvegicus
• Alignment Length: 193
• Identity: 52/193 - (26%)
• Similarity: 82/193 - (42%)
• Gaps: 56/193 - (29%)

  Fly   246 AAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDS--DSESDSGNEAGSSQNSGNGKKNPPQIYPWM 308
            |.|.|:.|.:|....||......|:  |...:|  ::|...|:|:|..     |::.||
  Rat     2 ARATLDMNAAGLEARGGGHIEQGPL--PFSVESLLEAERVRGSESGEL-----GEERPP------ 53

  Fly   309 KRVHLGTS-----------------------TVNANGETKRQRTSYTRYQTLELEKEFHFNRYLT 350
                 |.|                       |:..:...::.||.:|..|.|.||::||..:||:
  Rat    54 -----GASKPGAWPPPVAHSCPPRAPSPPPCTLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLS 113

  Fly   351 RRRRIEIAHALCLTERQIKIWFQNRRMKWKK--EHKMASMNI-----------VPYHMGPYGH 400
            ...|.|.:.:|.|||.|:||||||||.|.|:  |.::..:.:           :|:.:|...|
  Rat   114 IAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKLTAKPLLPAAFALPFPLGTQLH 176

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	27/55 (49%)
Msx3	NP_446164.1	Homeodomain	88..144	CDD:459649	27/55 (49%)