DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Prrx2

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001402085.1 Gene:Prrx2 / 113931 RGDID:1311471 Length:248 Species:Rattus norvegicus


Alignment Length:139 Identity:37/139 - (26%)
Similarity:58/139 - (41%) Gaps:24/139 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   246 AAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKR 310
            ||||    ...:|...||.........|.||.|.||  :..:.|...:.|:|             
  Rat    45 AAAG----RRAAGPVPGPEAREGAAREPSGGSSGSE--AAPQDGDCPSPGHG------------- 90

  Fly   311 VHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNR 375
                 |......:.:|.||::...|...||:.|....|.....|.|:|..:.|:|.::::|||||
  Rat    91 -----SATKRKKKQRRNRTTFNSSQLQALERVFERTHYPDAFVREELARRVNLSEARVQVWFQNR 150

  Fly   376 RMKWKKEHK 384
            |.|:::..:
  Rat   151 RAKFRRNER 159

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 20/55 (36%)
Prrx2NP_001402085.1 Homeodomain 104..156 CDD:459649 18/51 (35%)
COG5576 <110..214 CDD:227863 17/50 (34%)
OAR 222..238 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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