DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and Hoxd11

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001414331.1 Gene:Hoxd11 / 102553842 RGDID:7730597 Length:336 Species:Rattus norvegicus


Alignment Length:424 Identity:108/424 - (25%)
Similarity:149/424 - (35%) Gaps:172/424 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 PDCFAMSSYQFVNSLASCYPQQMNPQQNHPGAGNSS-----------------------AGGSGG 44
            |..|| |...|::..:||       |...|.:.|.:                       .||.||
  Rat    25 PSDFA-SKPSFLSQPSSC-------QMTFPYSSNLAPHVQPVREVAFRDYGLERAKWPYRGGGGG 81

  Fly    45 GAGGSGGVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAAYGGQGNPDM 109
            ||||.||    ||..||.|.:|...|    |:.||||                            
  Rat    82 GAGGGGG----GGPGGGGGGSGGYAP----YYAAAAA---------------------------- 110

  Fly   110 VDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPV 174
                                      ||||.||.::   |..|........::.::..| |.:||
  Rat   111 --------------------------AAAAAAAAEE---AAMQRDLLPPAGRRPDVLFK-APEPV 145

  Fly   175 --TPGGSGGGGVSGSNNNNNSANSNNN-------------NSQSLASPQDLSTRDISPKLSPSSV 224
              .||...|...:.|  |..||...|.             .....|.||        |:.:|:. 
  Rat   146 CGAPGPPHGPAAAAS--NFYSAVGRNGILPQGFDQFYEAAPGPPFAGPQ--------PQPAPAP- 199

  Fly   225 VESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGG-------PGNVNVPMHSPGGGDSDSES 282
                             .....||...:..:|:|..||       ||  ..|..:..||..:.|.
  Rat   200 -----------------PQPEGAADKGDPKAGAGGGGGSPCSKATPG--PEPKGAAEGGGGEGEG 245

  Fly   283 DSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNR 347
            ..| |||:.::.|                     || |...::::|..||:||..|||:||.||.
  Rat   246 PPG-EAGAEKSGG---------------------TV-APQRSRKKRCPYTKYQIRELEREFFFNV 287

  Fly   348 YLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 381
            |:.:.:|::::..|.||:||:||||||||||.||
  Rat   288 YINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKK 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 29/55 (53%)
Hoxd11NP_001414331.1 None

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