Protein Alignment Scr and Hoxa4

DIOPT Version :9

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: NP_077326.1
• Gene: Hoxa4 / 100912525
• RGDID: 2814
• Length: 285
• Species: Rattus norvegicus
• Alignment Length: 396
• Identity: 125/396 - (31%)
• Similarity: 146/396 - (36%)
• Gaps: 175/396 - (44%)

  Fly    40 GGSGGGAGGSGGVVPSGGTNGGQGSAGAATPGANDYFPAAAAYTPNLYPNTPQAHYANQAA---- 100
            ||.|||.||.|            |..|...|.::.:.||.   .|:....|| |:||.:|.
  Rat    27 GGPGGGDGGVG------------GGPGYPRPQSSPHLPAP---NPHAARQTP-AYYAPRAREPSY 75

  Fly   101 YGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAA-------AVAAQQQQQLAQQQHPQQQQ 158
            :||           |.|                |.|||       |..|:.:|..|...||....
  Rat    76 HGG-----------LYP----------------APAAACPYACRGASPARPEQSPAPGAHPSPAP 113

  Fly   159 QQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSS 223
            |.......|  |..|.||..:.||...                   |.|  |...|..|
  Rat   114 QPPAPPRRC--APGPTTPAVATGGSAP-------------------ACP--LLLADQGP------ 149

  Fly   224 VVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEA 288
                                                 .||
  Rat   150 -------------------------------------AGP------------------------- 152

  Fly   289 GSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNAN---GETKRQRTSYTRYQTLELEKEFHFNRYLT 350
                   .||:  |.:|||||::|:  |.||.:   ||.||.||:|||.|.||||||||||||||
  Rat   153 -------KGKE--PVVYPWMKKIHV--SAVNPSYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLT 206

  Fly   351 RRRRIEIAHALCLTERQIKIWFQNRRMKWKKEH-----KMASMNIVPYHMGPYG-------HPYH 403
            |||||||||.|||:|||:|||||||||||||:|     ||.|.|......||.|       ||:.
  Rat   207 RRRRIEIAHTLCLSERQVKIWFQNRRMKWKKDHKLPNTKMRSSNPASAPAGPPGKAQTHSPHPHP 271

  Fly   404 QFDIHP 409
                ||
  Rat   272 ----HP 273

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeobox	328..381	CDD:395001	46/52 (88%)
Hoxa4	NP_077326.1	Homeobox	183..236	CDD:278475	45/52 (87%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	1	1.000	-	-		FOG0000007
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X14
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.910