Protein Alignment Scr and Hoxc11

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: XP_038934166.1
• Gene: Hoxc11 / 100911859
• RGDID: 6489991
• Length: 329
• Species: Rattus norvegicus
• Alignment Length: 325
• Identity: 62/325 - (19%)
• Similarity: 96/325 - (29%)
• Gaps: 145/325 - (44%)

  Fly    54 PSGGTNGGQ-GSAGAATPGANDYFPAAAAYTPNLYPNT---PQAHYANQAAYGGQGNPDMVDYTQ 114
            ||....|.. |..|:.|  :|.|.|:...|.|.....:   |||
  Rat    13 PSRKERGADFGERGSCT--SNLYLPSCTYYVPEFSTVSSFLPQA--------------------- 54

  Fly   115 LQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKYANDPVTPGGS 179
              |.|                              |..:|...|......:|  |..:|
  Rat    55 --PSR------------------------------QISYPYSAQVPPVREVS--YGLEP------ 79

  Fly   180 GGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGG---SL 241
                 ||..::.||.:|      ..|:..:|..|:..|   ||:|.|.:.:  |:|..||   ..
  Rat    80 -----SGKWHHRNSYSS------CYAAADELMHRECLP---PSTVTEILMK--NEGSYGGHHHPS 128

  Fly   242 AAAAAAAG----LNNNH--------------------------SGSGVSGG----PGNVNVPMHS 272
            |..||.||    :|.|.                          ||.|.:.|    |....:...:
  Rat   129 APHAAPAGFYSSVNKNSVLPQAFDRFFDNAYCGGGDAPAEPPCSGKGEAKGEPEAPPASGLASRA 193

  Fly   273 PGGGDSDSESDSGNEAGSSQNSGNGKK------------NPPQIYP-------------WMKRVH 312
            ..|.::::|.::.|.:.|..:....|:            ||.:..|             :::|||
  Rat   194 EAGAEAEAEEENTNPSSSGSSHSATKEPAKGAAPSRRPPNPQEALPLFEIPDPGTGARVFLQRVH 258

  Fly   313  312
              Rat   259  258

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649
Hoxc11	XP_038934166.1	DUF3528	42..161	CDD:432284	36/195 (18%)