DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and pitx3

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_002935807.2 Gene:pitx3 / 100496690 XenbaseID:XB-GENE-486162 Length:292 Species:Xenopus tropicalis


Alignment Length:574 Identity:109/574 - (18%)
Similarity:178/574 - (31%) Gaps:232/574 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 DPNAQYQVSIPMV----------EESIRRCLLSAVTNINLSEEMPE----------------ERN 237
            :|..|||....::          .|.:||  |..:.|.::.:..|.                |.:
 Frog   623 NPGEQYQRQCELILEKLELQSLLSEELRR--LERLQNQSVHQSQPRVLEVETTPGSLRNGPGEES 685

  Fly   238 TFADTFSRTIYNPPTH--SPSGTMRNS-----------------------YNNYDTNLHVDAYGT 277
            .|. |.|:...|..||  ||.|:...|                       .||.|.:|  |.:..
 Frog   686 NFR-TSSQQEINYSTHIFSPGGSPEGSPVLDPPPHLEPNRSTSRKHSAQHKNNRDDSL--DWFDF 747

  Fly   278 QSSHRSNSPSGDVPEMFKKLNESHLISPSYNTNSIPNKMRIKVIKASRLGREVSQPFVNVEMDEP 342
            .::|:| .|...|           ::||...|:.  ..|..|:..::..|:|.|         ||
 Frog   748 MATHQS-EPKNTV-----------VVSPHPKTSG--ENMASKISNSTSQGKEKS---------EP 789

  Fly   343 AQKYSTTKGINANPFWEETFDFDLTPATEEILFEIYEGNDKLHMNDDEGFLGLAIVNFEEIRRSG 407
            .|:.....|:..:|                                                  |
 Frog   790 GQRSKVDIGLLPSP--------------------------------------------------G 804

  Fly   408 ETVHSLKLQGRPYRKD----------AISGEITVQFDFFYDPNLLTSGKLTDTVKVTNPNGSEF- 461
            ||       |.|:|.|          |:..|..|..|  ...::||.....:..|:......:. 
 Frog   805 ET-------GVPWRADNVESNKKKRLALDSEAAVSAD--KPDSVLTHHVPRNLQKLCKERAQKLC 860

  Fly   462 --------RETLTTHRR--PIYDPHDNFDGHEPIVPSKTTTVTVKTVSQTLKEKPTIQSVH--GS 514
                    :.|:.:|.:  |::.|....|..:...|        |:::|.  |:|.|::|.  ||
 Frog   861 RNSTRVPAQCTVPSHPQSTPVHSPDRMLDSPKRKRP--------KSLAQV--EEPAIENVKPPGS 915

  Fly   515 ----LENAVDPATQKILDRQFKNHN--DPKTRELEAKLQSVAQSMS---ASSTLDRPSK----NG 566
                |.........|:: ..|::|:  .|...::......::|..:   |:..:.||.|    .|
 Frog   916 PVAKLAKFTFKQKSKLI-HSFEDHSHVSPGATKIAVHSPKISQRRTRRDAALPVKRPGKLTSTPG 979

  Fly   567 N------NGQYYRDQTAPPEFHEELDVRQSRDKSKKAPTEKR---------------DRSFFGEL 610
            |      .|:.......|||.|      ..|:|...|| |||               ..:..|:.
 Frog   980 NQISSQPQGETKEVSQQPPEKH------GPREKVMCAP-EKRIIQPELELGNETGCAHLTCEGDK 1037

  Fly   611 KDRLSG--RRGR-----------------SQKRSKSVDVENNQLLEEAVSLPPS 645
            |:.:||  :.|:                 |:.:|||...|.....|...|.||:
 Frog  1038 KEEVSGSNKSGKVHACTLARLANFCFTPPSESKSKSPPPERKNRGERGPSSPPT 1091

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 8/55 (15%)
pitx3XP_002935807.2 Homeodomain 61..117 CDD:459649
OAR 250..267 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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