Protein Alignment Scr and hoxb1

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: XP_004918719.1
• Gene: hoxb1 / 100493290
• XenbaseID: XB-GENE-485772
• Length: 304
• Species: Xenopus tropicalis
• Alignment Length: 242
• Identity: 75/242 - (30%)
• Similarity: 102/242 - (42%)
• Gaps: 39/242 - (16%)

  Fly   173 PVTPG------GSG----GGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSSVVES 227
            |..||      |.|    ||| :|..::.:..|.:.....|...|...|....:|:....:....
 Frog    38 PACPGTNDIYNGDGRFVVGGG-NGVPSHLHQQNPSYPPQPSAGVPYTNSLTSYTPQTCNQAYGHQ 101

  Fly   228 VARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGG-PGNVNVPMHSPGGGD-------------- 277
            ...|.:...:.....|..:..|.|:|....|..|. ||......| |.|.:
 Frog   102 AYASPDADGIYFQQTAYCSNTGANSNSYSDGYCGAVPGPAQYQQH-PYGQEHQGLLQAYHNPPSM 165

  Fly   278 --SDSESDSGNEAGSSQNSGNG---KKNPPQIYPWMKRVHLGTSTVNANGETKRQRTSYTRYQTL 337
              .:.|....:|.....::.:.   |:|||:  ...|.|..|.||     :....||::|..|..
 Frog   166 LHEEKEPSCPSEQALPNHTFDWMKVKRNPPK--TTAKPVDFGLST-----QQNTIRTNFTTKQLT 223

  Fly   338 ELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHK 384
            |||||||||:||||.||:|||..|.|.|.|:||||||||||.||..:
 Frog   224 ELEKEFHFNKYLTRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 270

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	36/55 (65%)
hoxb1	XP_004918719.1	PTZ00395	<12..>147	CDD:185594	24/110 (22%)
		Homeodomain	214..267	CDD:459649	36/52 (69%)