Protein Alignment Scr and barhl1

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: XP_004916717.1
• Gene: barhl1 / 100491447
• XenbaseID: XB-GENE-853661
• Length: 327
• Species: Xenopus tropicalis
• Alignment Length: 288
• Identity: 69/288 - (23%)
• Similarity: 110/288 - (38%)
• Gaps: 90/288 - (31%)

  Fly   178 GSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISP-KLSPSSVVESVA-------RSLNK 234
            |:.|.|:       ::..|:...|..||....|.....|| :|||||.|.||.       |....
 Frog     3 GANGFGI-------DTILSHRAGSPGLAQGDTLMGESRSPLELSPSSEVSSVCSSPPSPDRDCLD 60

  Fly   235 GVLGGSLAAAAAAAGLNNNHSGSGV----------------------------SGGPGNVN-VPM 270
            ||.|....|.|.     .:|...||                            :..|.:.| .|.
 Frog    61 GVAGRQGVALAM-----ESHLQPGVQLSAPSQSRTVTSSFLIRDILADCKPLATCAPYSSNGQPT 120

  Fly   271 H-------SPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNANGET---- 324
            |       |....|...:.|..:.:.||::...||....           |...::::.::
 Frog   121 HDLAHCLASKAADDFRDKLDKSSSSTSSESEYKGKVKEE-----------GDREISSSRDSPPVR 174

  Fly   325 ----KRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE--- 382
                ::.||::|.:|..:||:.|...:||:.:.|:|:|.:|.||:.|:|.|:||||.|||::
 Frog   175 LKKPRKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRTKWKRQTAV 239

  Fly   383 ---------HKMASMNIVPYHMGPYGHP 401
                     :..|...:.|   .||.:|
 Frog   240 GLELLAEAGNYSALQRMFP---SPYFYP 264

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	24/55 (44%)
barhl1	XP_004916717.1	Homeodomain	179..235	CDD:459649	24/55 (44%)