DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and hoxa3

DIOPT Version :9

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:NP_001120901.1 Gene:hoxa3 / 100151729 XenbaseID:XB-GENE-482267 Length:406 Species:Xenopus tropicalis


Alignment Length:463 Identity:118/463 - (25%)
Similarity:158/463 - (34%) Gaps:171/463 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 HYANQAAYGGQGNPDMVDYTQLQPQRLLLQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQ 158
            :|.:.|.|||........:|            ....|||:..:::.:..:..:.....|.|....
 Frog     6 YYDSSAIYGGYPYQGANGFT------------YNASQQQYPPSSSLLETEYHRPACSLQSPGSAV 58

  Fly   159 QQQQANISCKYANDPVTPGGSGGGGVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPKLSPSS 223
            ...:|                         |:.|.:.....||||..:|       :.|:..|:.
 Frog    59 PHHKA-------------------------NDINESCMRTINSQSNQAP-------VIPEQQPTP 91

  Fly   224 VVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEA 288
                                                .|.|.:|:.|            ..:.|.|
 Frog    92 ------------------------------------QGPPPSVSPP------------QTTSNAA 108

  Fly   289 GSSQNSGNGKKNP---PQIYPWMKRVHLGTSTVNA----NGE-------------TKRQRTSYTR 333
            .:|.|......:|   .||:||||.....|....|    :||             :||.||:||.
 Frog   109 TASSNKATSITSPTMSKQIFPWMKESRQNTKQQKAGSSSSGESCAGDKSPPGQSSSKRARTAYTS 173

  Fly   334 YQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKEHKMASM---------- 388
            .|.:||||||||||||.|.||:|:|:.|.||||||||||||||||:||:.|..||          
 Frog   174 AQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKYKKDQKGKSMMTSSGGQSPC 238

  Fly   389 --------------------NIVPY-----------HMGPYGHPYHQFDIHPSQFAHLSAXDAWH 422
                                |.|||           |...||.|......|.|...|..     .
 Frog   239 RSPVPTPSVGGYLNSMHSLVNSVPYEPQSPPAFNKHHPSAYGVPAPYPSPHNSCPPHQK-----R 298

  Fly   423 FSGTGXRLNQLYQEPYQTAAAASAASGYQSQDGGP--IGGGSVGVGGGAG----GPGSLANGGSN 481
            :|||.....:....|.|   .:|.|.|.....|.|  :||..|.....:|    |...|::..||
 Frog   299 YSGTAAVTPEYEPHPLQ---QSSGAYGNPHVQGSPVYVGGNYVETMTNSGPSMFGLSHLSHSSSN 360

  Fly   482 ----GSGP 485
                |:||
 Frog   361 MDYSGAGP 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeobox 328..381 CDD:395001 39/52 (75%)
hoxa3NP_001120901.1 Homeobox 168..221 CDD:395001 39/52 (75%)
DUF4074 344..404 CDD:404218 8/25 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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