DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and nkx2-1

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_002935383.1 Gene:nkx2-1 / 100135015 XenbaseID:XB-GENE-485985 Length:346 Species:Xenopus tropicalis


Alignment Length:406 Identity:83/406 - (20%)
Similarity:128/406 - (31%) Gaps:122/406 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 LQQQQQQQQQQHAHAAAAVAAQQQQQLAQQQHPQQQQQQQQANISCKY----ANDPVTPGGSGGG 182
            |::..::...:.|...|.::|..:|....|...||........:|..|    |..|.....:.||
 Frog    20 LEESYKKVAMESAGLGAPLSAAYRQSQVSQASMQQHGMGHNGPVSAAYHMTAAGVPQLSHTTMGG 84

  Fly   183 GVSGSNNNNNSANSNNNNSQSLASPQDLSTRDISPK----LSPSSVVESVARSLNKGVLGGSLAA 243
            ..:|        |..|..:.|...|...:.|:.|..    .:|.....:::|.:           
 Frog    85 YCNG--------NLGNLGNMSELPPYQDTMRNSSATGWYGANPDPRFSTISRFM----------- 130

  Fly   244 AAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWM 308
             ..::|:|        .||.||:.                |..:.|.|.       .|.|..|..
 Frog   131 -GPSSGMN--------MGGLGNMG----------------SLGDVGKSM-------TPLQATPRR 163

  Fly   309 KRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQ 373
            ||                 |..:::.|..|||:.|...:||:...|..:|..:.||..|:|||||
 Frog   164 KR-----------------RVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQ 211

  Fly   374 NRRMKWKKEHKMASMNIVPYHMGPYGHPYHQFDIHPSQFAHLSAXDAWHFSGTGXRLNQLYQEPY 438
            |.|.|.|::.|                     |....|.........           |..|.|.
 Frog   212 NHRYKMKRQAK---------------------DKAAQQQMQQDNSSC-----------QQQQSPR 244

  Fly   439 QTAAAASAASGYQSQDGGPIGGGS----VGVGGGAGGPGSLANGGSNGSGPNSLFASAASSSQAP 499
            :.|.....      :||.|...||    ..:........:.....|||.||:... ...|:.|:|
 Frog   245 RVAVPVLV------KDGKPCQAGSNTPTAALQSHQQQTATAITVTSNGLGPHQSH-QTNSAGQSP 302

  Fly   500 DCIKY---PQEFXSQV 512
            |.:.:   |....:||
 Frog   303 DLVPHSNSPSSLQNQV 318

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 21/55 (38%)
nkx2-1XP_002935383.1 Homeodomain 163..219 CDD:459649 23/72 (32%)

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