Protein Alignment Scr and hoxa2

DIOPT Version :10

• Sequence 1: NP_001368995.1
• Gene: Scr / 40833
• FlyBaseID: FBgn0003339
• Length: 564
• Species: Drosophila melanogaster
• Sequence 2: XP_004915456.1
• Gene: hoxa2 / 100038099
• XenbaseID: XB-GENE-488087
• Length: 373
• Species: Xenopus tropicalis
• Alignment Length: 201
• Identity: 71/201 - (35%)
• Similarity: 90/201 - (44%)
• Gaps: 75/201 - (37%)

  Fly   216 SPKLSPSSVV----ESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNVNVPMHSPGGG 276
            |..||.|:::    |....|||              .|.:..||.            |.|||.|
 Frog    39 SSALSHSTLIPPPFEQTIPSLN--------------PGSHPRHSR------------PKHSPNG- 76

  Fly   277 DSDSESDSGNEAGSSQNSGNGKKNPPQIYPWM------KRVHLGTSTV----------------- 318
                ..||...|||.         ||: ||||      |:..:..:|.
 Frog    77 ----HGDSPVPAGSL---------PPE-YPWMKEKKASKKAPIAAATAAAAASAAPATTACLSHK 127

  Fly   319 -------NANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRR 376
                   |::|.::|.||:||..|.||||||||||:||.|.||:|||..|.|||||:|:||||||
 Frog   128 EIIEIQDNSSGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRR 192

  Fly   377 MKWKKE 382
            ||.|::
 Frog   193 MKHKRQ 198

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Scr	NP_001368995.1	Homeodomain	325..381	CDD:459649	39/55 (71%)
hoxa2	XP_004915456.1	Homeodomain	141..197	CDD:459649	39/55 (71%)