DRSC/TRiP Functional Genomics Resources

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Protein Alignment Scr and tlx3a

DIOPT Version :10

Sequence 1:NP_001368995.1 Gene:Scr / 40833 FlyBaseID:FBgn0003339 Length:564 Species:Drosophila melanogaster
Sequence 2:XP_003199819.1 Gene:tlx3a / 100008066 ZFINID:ZDB-GENE-080724-11 Length:251 Species:Danio rerio


Alignment Length:183 Identity:55/183 - (30%)
Similarity:80/183 - (43%) Gaps:20/183 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 QSLASPQDLSTRDISPKLSPSSVVESVARSLNKGVLGGSLAAAAAAAGLNNNHSGSGVSGGPGNV 266
            |.|.|.:..|:|..||.::|...:..|:...:..|.|.|.|..                  ||.|
Zfish    23 QILGSAEPESSRLGSPNIAPHVPLPGVSLEESGRVFGVSSALL------------------PGGV 69

  Fly   267 -NVPMHSPGGGDSDSESDSGNEAGSSQNSGNGKKNPPQIYPWMKRVHLGTSTVNAN-GETKRQRT 329
             .||.|.|......|.:.:........|....|...|.:.|:.....:|....|.. .:.|:.||
Zfish    70 IRVPAHRPLAPAMMSAAPALCFPWMDNNRRFPKDRLPALIPFTVTRRIGHPYQNRTPPKRKKPRT 134

  Fly   330 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKE 382
            |::|.|..||||.||..:||....|..:|.:|.:|:.|:|.||||||.||:::
Zfish   135 SFSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQ 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScrNP_001368995.1 Homeodomain 325..381 CDD:459649 28/55 (51%)
tlx3aXP_003199819.1 Homeodomain 130..186 CDD:459649 28/55 (51%)

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