Protein Alignment Dfd and Cdx2

DIOPT Version :9

• Sequence 1: NP_477201.1
• Gene: Dfd / 40832
• FlyBaseID: FBgn0000439
• Length: 586
• Species: Drosophila melanogaster
• Sequence 2: NP_076453.1
• Gene: Cdx2 / 66019
• RGDID: 621234
• Length: 310
• Species: Rattus norvegicus
• Alignment Length: 515
• Identity: 119/515 - (23%)
• Similarity: 156/515 - (30%)
• Gaps: 238/515 - (46%)

  Fly     8 YPHAPHHVQSPMSMGNGLDPK---FPPLADDYHHYNGHYSMTASTGHMSGAVGGGAGVGSVGGGG 69
            ||.:..|     |.|..|.|:   .||...||..|           |::.|....|.:.|....|
  Rat    14 YPSSVRH-----SGGLNLAPQNFVSPPQYPDYGGY-----------HVAAAAAAAANLDSAQSPG 62

  Fly    70 AGGMTGHPHSMHPADMVSDYMAHHHNPHSHSHSHTHSLPHHHSNSAISGHHQASAGGYSSNYANA 134
            ....|.     :.|.:..|:..:.....:.:::..|.|         :|...|:|.||||
  Rat    63 PSWPTA-----YGAPLREDWNGYAPGGAAAANAVAHGL---------NGGSPAAAMGYSS----- 108

  Fly   135 TPPS--HPHSHPHAHPHQSLGYYVHHAPEFISAGAVHSDPTNGYGPAANVPNTSNGGGGGGSGAV 197
              |:  |.|.|||.|||.                           ||| .|:.::|
  Rat   109 --PAEYHAHHHPHHHPHH---------------------------PAA-APSCASG--------- 134

  Fly   198 LGGGAVGGSANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMMDLPLQCSSTEPPTNTALGLQEL 262
                                                         .||..:..||.
  Rat   135 ---------------------------------------------LLQTLNPGPPG--------- 145

  Fly   263 GLKLEKRIEEAVPAGQQLQELGMRLRCDDMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSD 327
                    ..|..|.:||...|.|
  Rat   146 --------PAATAAAEQLSPSGQR----------------------------------------- 161

  Fly   328 SDEDLMAETTDGERIIYPWMKKIHVAGVANGSYQPGMEPKRQRTAYTRHQILELEKEFHYNRYLT 392
                         |.:..||:|  .|..:.||........:.|..||.||.|||||||||:||:|
  Rat   162 -------------RNLCEWMRK--PAQPSLGSQVKTRTKDKYRVVYTDHQRLELEKEFHYSRYIT 211

  Fly   393 RRRRIEIAHTLVLSERQIKIWFQNRRMKWKKDNKLPNTKNVRKKTVDANGNPTPVAKKPTKRAAS 457
            .||:.|:|.||.|||||:||||||||.|.:|.||
  Rat   212 IRRKAELAATLGLSERQVKIWFQNRRAKERKINK------------------------------- 245

  Fly   458 KKQQQAQQQQQSQQQQTQQTPVMNECIRSDSLESIGDVSSSLGNPPYIPAAPETTSSYPG 517
            ||.||.||||.......|.:...:..:||.. |.:..|:|..|:.|         .|.||
  Rat   246 KKLQQQQQQQPPAPPPPQPSQPQSGALRSVP-EPLSPVTSLQGSVP---------GSVPG 295

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Dfd	NP_477201.1	Homeobox	370..422	CDD:278475	37/51 (73%)
Cdx2	NP_076453.1	Caudal_act	13..170	CDD:282574	56/345 (16%)
		Homeobox	189..241	CDD:278475	37/51 (73%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	1.910