DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dfd and Nkx6-1

DIOPT Version :10

Sequence 1:NP_477201.1 Gene:Dfd / 40832 FlyBaseID:FBgn0000439 Length:586 Species:Drosophila melanogaster
Sequence 2:NP_113925.1 Gene:Nkx6-1 / 65193 RGDID:69318 Length:365 Species:Rattus norvegicus


Alignment Length:381 Identity:77/381 - (20%)
Similarity:129/381 - (33%) Gaps:134/381 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 SAGGYSSNYANATPPSHPHS-----HPHAHPHQSLGYYVHHAPEFISAGAVH------SDPTNGY 176
            |:...||:.::.:||...|:     .|.|....|||    ..|:.:||...|      |.|:...
  Rat    49 SSSSSSSSSSSPSPPLGAHNPGGLKPPAAGGLSSLG----SPPQQLSAATPHGINDILSRPSMPV 109

  Fly   177 GPAANVPNTSNGGGGGGSGAVLGGGAVGGSANGYYGGYGGGYGTANGSVGSTHSQGHSPHSQMMD 241
            ...|.:|:.|..|....|.:  ...|...||            .|..:..:..:...||...:..
  Rat   110 ASGAALPSASPSGSSSSSSS--SASATSASA------------AAAAAAAAAAAAASSPAGLLAG 160

  Fly   242 LPLQCSSTEPP-------TNTALGLQELGLKLEKRIEEAVPAGQQLQELGM---------RLRCD 290
            ||...|.:.||       :.:|..:..:| :..|.:.| :|....:...|:         ||.| 
  Rat   161 LPRFSSLSPPPPPPGLYFSPSAAAVAAVG-RYPKPLAE-LPGRTPIFWPGVMQSPPWRDARLAC- 222

  Fly   291 DMGSENDDMSEEDRLMLDRSPDELGSNDNDDDLGDSDSDEDLMAETTDGERIIYPWMKKIHVAGV 355
                    ...:..::||:                            ||:|              
  Rat   223 --------TPHQGSILLDK----------------------------DGKR-------------- 237

  Fly   356 ANGSYQPGMEPKRQRTAYTRHQILELEKEFHYNRYLTRRRRIEIAHTLVLSERQIKIWFQNRRMK 420
                       |..|..::..||..|||.|...:||....|..:|::|.::|.|:|:||||||.|
  Rat   238 -----------KHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTK 291

  Fly   421 WKKDNKLPNTKNVRKKTVDANGNPTPVAKKPTKRAASKKQQQAQQQQQSQQQQTQQ 476
            |:|                         |...:.|.:||:|.::.::.....:.::
  Rat   292 WRK-------------------------KHAAEMATAKKKQDSETERLKGTSENEE 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DfdNP_477201.1 Homeodomain 367..423 CDD:459649 24/55 (44%)
Nkx6-1NP_113925.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 35..136 23/92 (25%)
Repressor domain. /evidence=ECO:0000250 102..269 43/244 (18%)
Homeodomain 236..294 CDD:459649 25/82 (30%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 295..365 5/28 (18%)
Involved in DNA-binding. /evidence=ECO:0000250 307..365 1/16 (6%)

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